NIEHS
Comparative
Mouse Genomics Centers Consortium (CMGCC)

CEG Bioinformatics Projects


GeneServer

Integrate data for genes, transcripts, proteins, complexes, pathways, processes (ontologies)

SNPproteinStructureMapper

Visualize variations in known or predicted 3-D protein structures and domains

Cincinnati Genes:

TRAFAC

A web-accessible, gene regulatory region discovery tool.

Cincinnati Genes:

Click To View the Pathway List

Pathways

PathMaker

To design and annotate all the elements in a pathway and also modify existing pathways

Components:

  • Selector: Populates the Gene Objects
    • Select genes based on the Gene Ontology assignments
    • Selected genes are placed in the gene object tab of a palette
    • Selected gene used as a navigation point to gene related objects. For e.g.: adding a protein or a transcript or a polymorphism
  • Assembler: Operates within Pathway Biological Object Model
    • Work from the PathMaker palette
    • Specify interactions between the genes
  • Viewer: Displays a graphical image of the current Pathway

Expression Database

  • Repository
  • Mining
  • MultiCenterProjects
  • Predictive Phenotyping Approach